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This class will cover an introduction to command line tools for managing genomic data. It will start with basic Unix commands for managing files and directories, followed by a review of the main starndardized data formats and hands-on instruction on how to use popular tools such as Samtools, Bedtools, Bowtie, and application specific technologies such as Bcftools and Cufflinks.

Johns Hopkins University

Teacher: Professor Jeff Leek, PhD
Provided by: Coursera
Course language: English
Fees: free course
Level: intermediate
Certificate possible? (fee)
Format: MOOC/online course

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